Transcript: lnc-RUFY4-1:2

Basic information

LNCipedia transcript ID: lnc-RUFY4-1:2 
LNCipedia gene ID: lnc-RUFY4-1
Location (hg38): chr2:217986796-217993734
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 607 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004027; NONHSAT076875
Alternative gene names: XLOC_001865; linc-RUFY4-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.0276 non-coding 
CPAT coding probability 11.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RUFY4-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RUFY4-1:1
3.1 lnc-RUFY4-1:2
4.0 lnc-RUFY4-1:2
4.1 lnc-RUFY4-1:2
5.0 lnc-RUFY4-1:2
5.1 lnc-TMEM169-49:8
5.2 lnc-RUFY4-1:2