Transcript: lnc-RUNX1-12:6

Basic information

LNCipedia transcript ID: lnc-RUNX1-12:6 
LNCipedia gene ID: lnc-RUNX1-12
RefSeq ID: NR_073512
Location (hg38): chr21:35372507-35580764
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 457 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT081909; NR_073512; NR_073512.1
Alternative gene names: LOC100506403


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -191.9253 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RUNX1-12:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SETD4-12:6
4.0 lnc-RUNX1-12:6
4.1 lnc-RUNX1-12:6
5.0 lnc-RUNX1-12:6
5.1 lnc-CRYZL1-25:7
5.2 lnc-RUNX1-12:6