Transcript: lnc-RUNX2-3:1

Basic information

LNCipedia transcript ID: lnc-RUNX2-3:1 
LNCipedia gene ID: lnc-RUNX2-3
Location (hg38): chr6:45681357-45684749
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2829 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_3186_chr6:45649093-45652486_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.2472 non-coding 
CPAT coding probability 3.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RUNX2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RUNX2-3:1
4.0 lnc-RUNX2-3:1
4.1 lnc-RUNX2-3:1
5.0 lnc-RUNX2-3:1
5.1 lnc-TREML4-94:1
5.2 lnc-RUNX2-3:1