Transcript: lnc-RUNX3-1:1

Basic information

LNCipedia transcript ID: lnc-RUNX3-1:1 
LNCipedia gene ID: lnc-RUNX3-1
Ensembl Gene ID: ENSG00000261025
Ensembl Transcript ID: ENST00000568143
Location (hg38): chr1:24968423-24970865
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2443 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568143.1; RP11-84D1.2-001; OTTHUMT00000431056.1; NONHSAT001679
Alternative gene names: ENSG00000261025.1; RP11-84D1.2; OTTHUMG00000175776.1; AL445471.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.0543 non-coding 
CPAT coding probability 59.27% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RUNX3-1:1 no no no no

Available literature

  1. Hrdlickova (2014), Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RUNX3-1:1
4.0 lnc-RUNX3-1:1
4.1 lnc-RUNX3-1:1
5.0 lnc-RUNX3-1:1
5.1 lnc-CRYBG2-22:2
5.2 lnc-RUNX3-1:1