Transcript: lnc-RUNX3-1:2

Basic information

LNCipedia transcript ID: lnc-RUNX3-1:2 
LNCipedia gene ID: lnc-RUNX3-1
Location (hg38): chr1:24968058-24970867
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2460 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT001678
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.0543 non-coding 
CPAT coding probability 59.25% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RUNX3-1:2 no no no no

Available literature

  1. Hrdlickova (2014), Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RUNX3-1:2
4.0 lnc-RUNX3-1:2
4.1 lnc-RUNX3-1:2
5.0 lnc-RUNX3-1:2
5.1 lnc-CRYBG2-22:1
5.2 lnc-RUNX3-1:2