Transcript: lnc-RWDD2B-2:1

Basic information

LNCipedia transcript ID: lnc-RWDD2B-2:1 
LNCipedia gene ID: lnc-RWDD2B-2
Ensembl Gene ID: ENSG00000273254
Ensembl Transcript ID: ENST00000608809
Location (hg38): chr21:29024255-29024890
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 636 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608809.1
Alternative gene names: ENSG00000273254.1; RP1-100J12.1; AF129075.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.341 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RWDD2B-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RWDD2B-2:1
4.0 lnc-RWDD2B-2:1
4.1 lnc-RWDD2B-2:1
5.0 lnc-RWDD2B-2:1
5.1 lnc-LTN1-4:1
5.2 lnc-RWDD2B-2:1