Transcript: lnc-RWDD3-7:6

Basic information

LNCipedia transcript ID: lnc-RWDD3-7:6 
LNCipedia gene ID: lnc-RWDD3-7
Ensembl Gene ID: ENSG00000237435
Ensembl Transcript ID: ENST00000451675
Location (hg38): chr1:95992068-96022866
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 799 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000257; ENST00000451675; ENST00000451675.1; RP11-147C23.1-002; OTTHUMT00000029472.1; NONHSAT004694; ENST00000451675.5
Alternative gene names: XLOC_000312; linc-PTBP2-2; ENSG00000237435; RP11-147C23.1; ENSG00000237435.1; OTTHUMG00000010691.2; ENSG00000237435.9; AC099566.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.9835 non-coding 
CPAT coding probability 5.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RWDD3-7:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTBP2-2:6
3.1 lnc-RWDD3-7:6
4.0 lnc-RWDD3-7:6
4.1 lnc-RWDD3-7:6
5.0 lnc-RWDD3-7:6
5.1 lnc-BTBD8-51:17
5.2 lnc-RWDD3-7:6