Transcript: lnc-RXRG-1:3

Basic information

LNCipedia transcript ID: lnc-RXRG-1:3 
LNCipedia gene ID: lnc-RXRG-1
Ensembl Gene ID: ENSG00000237463
Ensembl Transcript ID: ENST00000421273
Location (hg38): chr1:165476842-165582104
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1752 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421273.1; RP11-280O1.2-001; OTTHUMT00000083786.1; NONHSAT007310; NR_026744; ENST00000421273.5
Alternative gene names: ENSG00000237463.1; RP11-280O1.2; OTTHUMG00000034624.1; ENSG00000237463.5; AL157714.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 45.2325 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RXRG-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RXRG-1:3
4.0 lnc-RXRG-1:3
4.1 lnc-RXRG-1:3
5.0 lnc-RXRG-1:3
5.1 lnc-SH2D1B-43:4
5.2 lnc-RXRG-1:3