Transcript: lnc-RYBP-1:1

Basic information

LNCipedia transcript ID: lnc-RYBP-1:1 
LNCipedia gene ID: lnc-RYBP-1
Ensembl Gene ID: ENSG00000260670
Ensembl Transcript ID: ENST00000570082
Location (hg38): chr3:72321051-72324027
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2977 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000570082.1; RP11-447M4.1-001; OTTHUMT00000430898.1; NONHSAT090452
Alternative gene names: ENSG00000260670.1; RP11-447M4.1; OTTHUMG00000175719.1; AC134508.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.7647 non-coding 
CPAT coding probability 11.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RYBP-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RYBP-1:1
4.0 lnc-RYBP-1:1
4.1 lnc-RYBP-1:1
5.0 lnc-RYBP-1:1
5.1 lnc-FOXP1-14:1
5.2 lnc-RYBP-1:1