Transcript: lnc-RYK-1:1

Basic information

LNCipedia transcript ID: lnc-RYK-1:1 
LNCipedia gene ID: lnc-RYK-1
Location (hg38): chr3:134065303-134075213
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 823 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00005831; ENST00000484106.1; RP11-202A13.2-001; OTTHUMT00000357169.1; NONHSAT092225
Alternative gene names: XLOC_003260; linc-SLCO2A1-2; ENSG00000244351.1; RP11-202A13.2; OTTHUMG00000159752.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.3921 non-coding 
CPAT coding probability 1.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RYK-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RYK-1:1
3.1 lnc-RYK-1:1
4.0 lnc-RYK-1:1
4.1 lnc-RYK-1:1
5.0 lnc-RYK-1:1
5.1 lnc-RYK-1:1
5.2 lnc-RYK-1:1