Transcript: lnc-S100A13-2:4

Basic information

LNCipedia transcript ID: lnc-S100A13-2:4 
LNCipedia gene ID: lnc-S100A13-2
Ensembl Gene ID: ENSG00000271853
Ensembl Transcript ID: ENST00000472233
Location (hg38): chr1:153627508-153634111
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 637 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT006531; ENST00000472233.1
Alternative gene names: ENSG00000271853.1; RP1-178F15.5; ENSG00000271853.5; AL162258.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.3582 non-coding 
CPAT coding probability 22.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-S100A13-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-S100A14-2:4
4.0 lnc-S100A13-2:4
4.1 lnc-S100A13-2:4
5.0 lnc-S100A13-2:4
5.1 lnc-S100A14-2:18
5.2 lnc-S100A13-2:4