Transcript: lnc-S100A13-2:5

Basic information

LNCipedia transcript ID: lnc-S100A13-2:5 
LNCipedia gene ID: lnc-S100A13-2
Ensembl Gene ID: ENSG00000271853
Ensembl Transcript ID: ENST00000484413
Location (hg38): chr1:153627491-153634049
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 508 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT006530; ENST00000484413.1; ENST00000484413.5
Alternative gene names: ENSG00000271853.1; RP1-178F15.5; ENSG00000271853.5; AL162258.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -295.0653 non-coding 
CPAT coding probability 2.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-S100A13-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-S100A14-2:5
4.0 lnc-S100A13-2:5
4.1 lnc-S100A13-2:5
5.0 lnc-S100A13-2:5
5.1 lnc-S100A14-2:19
5.2 lnc-S100A13-2:5