Transcript: lnc-S1PR1-2:1

Basic information

LNCipedia transcript ID: lnc-S1PR1-2:1 
LNCipedia gene ID: lnc-S1PR1-2
Location (hg38): chr1:101150553-101164720
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1145 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001078; NONHSAT004842
Alternative gene names: XLOC_000318; linc-S1PR1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -217.373 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-S1PR1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-S1PR1-1:1
3.1 lnc-S1PR1-2:1
4.0 lnc-S1PR1-2:1
4.1 lnc-S1PR1-2:1
5.0 lnc-S1PR1-2:1
5.1 lnc-SLC30A7-12:2
5.2 lnc-S1PR1-2:1