Transcript: lnc-SALL1-12:1

Basic information

LNCipedia transcript ID: lnc-SALL1-12:1 
LNCipedia gene ID: lnc-SALL1-12
Location (hg38): chr16:51619553-51641077
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 934 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000029268.1|MICT00000132321.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -21.2391 non-coding 
CPAT coding probability 3.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SALL1-12:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-152O14.5.1-3:2
5.0 lnc-RP11-152O14.5.1-3:2
5.1 lnc-CFAP20-121:1
5.2 lnc-SALL1-12:1