Transcript: lnc-SALL1-6:2

Basic information

LNCipedia transcript ID: lnc-SALL1-6:2 
LNCipedia gene ID: lnc-SALL1-6
Location (hg38): chr16:51387695-51525536
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1963 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024646; NONHSAT142474
Alternative gene names: XLOC_011938; linc-SALL1-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.2354 non-coding 
CPAT coding probability 12.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SALL1-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SALL1-3:2
3.1 lnc-SALL1-6:2
4.0 lnc-SALL1-6:2
4.1 lnc-SALL1-6:2
5.0 lnc-SALL1-6:2
5.1 lnc-CFAP20-122:2
5.2 lnc-SALL1-6:2