Transcript: lnc-SALL1-6:6

Basic information

LNCipedia transcript ID: lnc-SALL1-6:6 
LNCipedia gene ID: lnc-SALL1-6
Ensembl Gene ID: ENSG00000260850
Ensembl Transcript ID: ENST00000646267
Location (hg38): chr16:51356249-51525147
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1612 bp
Exons: 5
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000646267.1
Alternative gene names: ENSG00000260850.2; AC007344.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -89.0506 non-coding 
CPAT coding probability 32.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SALL1-6:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-CFAP20-122:4
5.1 lnc-CFAP20-122:4
5.2 lnc-SALL1-6:6