Transcript: lnc-SALL1-6:7

Basic information

LNCipedia transcript ID: lnc-SALL1-6:7 
LNCipedia gene ID: lnc-SALL1-6
Ensembl Gene ID: ENSG00000260850
Ensembl Transcript ID: ENST00000569751
Location (hg38): chr16:51354456-51356532
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 456 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569751.1; RP11-437L7.1-001; OTTHUMT00000422612.1; NONHSAT142473
Alternative gene names: ENSG00000260850.1; RP11-437L7.1; OTTHUMG00000173249.1; AC087564.1; ENSG00000260850.2; AC007344.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.9393 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SALL1-6:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SALL1-5:1
4.0 lnc-SALL1-5:1
4.1 lnc-SALL1-5:1
5.0 lnc-SALL1-5:1
5.1 lnc-CFAP20-122:7
5.2 lnc-SALL1-6:7