Transcript: lnc-SAMD11-16:4

Basic information

LNCipedia transcript ID: lnc-SAMD11-16:4 
LNCipedia gene ID: lnc-SAMD11-16
Location (hg38): chr1:594453-595215
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 437 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000124; ENST00000440196; ENST00000440196.1; RP5-857K21.3-001; OTTHUMT00000006708.1; NONHSAT000083
Alternative gene names: XLOC_000004; linc-SAMD11-8; ENSG00000239664; RP5-857K21.3; ENSG00000239664.1; OTTHUMG00000002330.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.7986 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAMD11-16:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR4F29-3:3
3.1 lnc-OR4F29-3:3
4.0 lnc-OR4F29-3:3
4.1 lnc-OR4F29-3:3
5.0 lnc-OR4F29-3:3
5.1 lnc-VAMP3-137:4
5.2 lnc-SAMD11-16:4