Transcript: lnc-SAMD11-5:9

Basic information

LNCipedia transcript ID: lnc-SAMD11-5:9 
LNCipedia gene ID: lnc-SAMD11-5
Location (hg38): chr1:905107-905806
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 578 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000796; NONHSAT000197
Alternative gene names: XLOC_000010; linc-SAMD11-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 44.6517 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SAMD11-5:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SAMD11-2:1
3.1 lnc-SAMD11-2:1
4.0 lnc-SAMD11-2:1
4.1 lnc-SAMD11-5:9
5.0 lnc-SAMD11-5:9
5.1 lnc-VAMP3-124:9
5.2 lnc-SAMD11-5:9