Transcript: lnc-SAMD3-1:1

Basic information

LNCipedia transcript ID: lnc-SAMD3-1:1 
LNCipedia gene ID: lnc-SAMD3-1
Location (hg38): chr6:130133410-130142827
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 454 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000415964.1; RP11-73O6.3-001; OTTHUMT00000042196.1; NONHSAT114898
Alternative gene names: ENSG00000227678.1; RP11-73O6.3; OTTHUMG00000015555.1; ENSG00000227678.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1172.951 non-coding 
CPAT coding probability 2.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAMD3-1:1 yes no no no

Available literature

  1. Cao (2016), Microarray profiling of bone marrow long non-coding RNA expression in Chinese pediatric acute myeloid leukemia patients., Oncol. Rep.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SAMD3-1:1
4.0 lnc-SAMD3-1:1
4.1 lnc-SAMD3-1:1
5.0 lnc-SAMD3-1:1
5.1 lnc-HDDC2-51:5
5.2 lnc-SAMD3-1:1