Transcript: lnc-SAMD5-4:3

Basic information

LNCipedia transcript ID: lnc-SAMD5-4:3 
LNCipedia gene ID: lnc-SAMD5-4
Location (hg38): chr6:147660705-147953937
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 771 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227681.1|ENST00000427015.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -0.5881 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAMD5-4:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SAMD5-1:9
5.0 lnc-SAMD5-1:9
5.1 lnc-ADGB-21:5
5.2 lnc-SAMD5-4:3