Transcript: lnc-SAP30-16:1

Basic information

LNCipedia transcript ID: lnc-SAP30-16:1 
LNCipedia gene ID: lnc-SAP30-16
Location (hg38): chr4:173479349-173480891
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1450 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT099253; FPKM1_group_24477_transcript_9
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.8425 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAP30-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SAP30-16:1
4.0 lnc-SAP30-16:1
4.1 lnc-SAP30-16:1
5.0 lnc-SAP30-16:1
5.1 lnc-GALNTL6-16:1
5.2 lnc-SAP30-16:1