Transcript: lnc-SAP30-19:1

Basic information

LNCipedia transcript ID: lnc-SAP30-19:1 
LNCipedia gene ID: lnc-SAP30-19
Location (hg38): chr4:173745955-173748539
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2082 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_2780_chr4:174667105-174669468_colon
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.9851 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAP30-19:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SAP30-19:1
4.0 lnc-SAP30-19:1
4.1 lnc-SAP30-19:1
5.0 lnc-SAP30-19:1
5.1 lnc-GALNTL6-21:1
5.2 lnc-SAP30-19:1