Transcript: lnc-SAP30-1:3

Basic information

LNCipedia transcript ID: lnc-SAP30-1:3 
LNCipedia gene ID: lnc-SAP30-1
Location (hg38): chr4:173358059-173358780
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 722 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT099238; FPKM1_group_24465_transcript_5
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.0767 non-coding 
CPAT coding probability 26.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAP30-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SAP30-1:3
4.0 lnc-SAP30-1:3
4.1 lnc-SAP30-1:3
5.0 lnc-SAP30-1:3
5.1 lnc-GALNTL6-6:3
5.2 lnc-SAP30-1:3