Transcript: lnc-SAP30-23:1

Basic information

LNCipedia transcript ID: lnc-SAP30-23:1 
LNCipedia gene ID: lnc-SAP30-23
Location (hg38): chr4:173593672-173594556
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 885 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000561655.1; RP11-475B2.1-001; OTTHUMT00000431733.1; NONHSAT099296
Alternative gene names: ENSG00000261672.1; RP11-475B2.1; OTTHUMG00000176297.1; DEIN; NBLA00301; FLJ11539; AC079789.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.9805 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAP30-23:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SAP30-6:1
4.0 lnc-SAP30-6:1
4.1 HAND2-AS1:107
5.0 HAND2-AS1:107
5.1 lnc-GALNTL6-58:1
5.2 lnc-SAP30-23:1