Transcript: lnc-SAV1-1:1

Basic information

LNCipedia transcript ID: lnc-SAV1-1:1 
LNCipedia gene ID: lnc-SAV1-1
Ensembl Gene ID: ENSG00000270062
Ensembl Transcript ID: ENST00000602615
Location (hg38): chr14:50723777-50724272
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 496 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT036814; ENST00000602615.1
Alternative gene names: ENSG00000270062.1; RP11-248J18.3; AL606834.3; AL606834.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -223.2956 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAV1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SAV1-1:1
4.0 lnc-SAV1-1:1
4.1 lnc-SAV1-1:1
5.0 lnc-SAV1-1:1
5.1 lnc-RTN1-106:1
5.2 lnc-SAV1-1:1