Transcript: lnc-SAXO1-2:1

Basic information

LNCipedia transcript ID: lnc-SAXO1-2:1 
LNCipedia gene ID: lnc-SAXO1-2
Ensembl Gene ID: ENSG00000227167
Ensembl Transcript ID: ENST00000443359
Location (hg38): chr9:18360597-18362220
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 237 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015796; ENST00000443359; ENST00000443359.1; RP11-570H19.2-001; OTTHUMT00000051798.1; NONHSAT130308
Alternative gene names: XLOC_007653; linc-BNC2-1; ENSG00000227167; RP11-570H19.2; ENSG00000227167.1; OTTHUMG00000019602.1; AL442638.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -260.4579 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAXO1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM154A-2:1
3.1 lnc-FAM154A-2:1
4.0 lnc-FAM154A-2:1
4.1 lnc-FAM154A-2:1
5.0 lnc-FAM154A-2:1
5.1 lnc-FREM1-22:1
5.2 lnc-SAXO1-2:1