Transcript: lnc-SBDS-7:1

Basic information

LNCipedia transcript ID: lnc-SBDS-7:1 
LNCipedia gene ID: lnc-SBDS-7
Ensembl Gene ID: ENSG00000226829
Ensembl Transcript ID: ENST00000446187
Location (hg38): chr7:68150283-68288233
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 641 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446187.1; RP5-945F2.3-001; OTTHUMT00000344660.2; NONHSAT121298
Alternative gene names: ENSG00000226829.1; RP5-945F2.3; OTTHUMG00000156582.2; AC093655.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.4373 non-coding 
CPAT coding probability 1.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SBDS-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SBDS-7:1
4.0 lnc-SBDS-7:1
4.1 lnc-SBDS-7:1
5.0 lnc-SBDS-7:1
5.1 lnc-TRIM74-69:1
5.2 lnc-SBDS-7:1