Transcript: lnc-SCAF11-7:1

Basic information

LNCipedia transcript ID: lnc-SCAF11-7:1 
LNCipedia gene ID: lnc-SCAF11-7
Location (hg38): chr12:45494687-45502710
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2502 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: refGeneNc_2367_NR_026544
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.2858 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCAF11-7:1 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCAF11-7:1
4.0 lnc-SCAF11-7:1
4.1 lnc-SCAF11-7:1
5.0 lnc-SCAF11-7:1
5.1 lnc-RPAP3-30:1
5.2 lnc-SCAF11-7:1