Transcript: lnc-SCAMP1-2:1

Basic information

LNCipedia transcript ID: lnc-SCAMP1-2:1 
LNCipedia gene ID: lnc-SCAMP1-2
RefSeq ID: NR_105012
Location (hg38): chr5:77884656-77959096
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 407 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_105012; NR_105012.1
Alternative gene names: LOC101929154


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.3467 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCAMP1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDE8B-2:2
4.0 lnc-PDE8B-2:2
4.1 lnc-PDE8B-2:2
5.0 lnc-PDE8B-2:2
5.1 lnc-BHMT2-22:1
5.2 lnc-SCAMP1-2:1