Transcript: lnc-SCAMP1-2:3

Basic information

LNCipedia transcript ID: lnc-SCAMP1-2:3 
LNCipedia gene ID: lnc-SCAMP1-2
Location (hg38): chr5:77958130-77959101
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 422 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00010004
Alternative gene names: XLOC_004440; linc-SCAMP1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.7237 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCAMP1-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDE8B-3:1
3.1 lnc-PDE8B-2:1
4.0 lnc-PDE8B-2:1
4.1 lnc-PDE8B-2:1
5.0 lnc-PDE8B-2:1
5.1 lnc-BHMT2-22:3
5.2 lnc-SCAMP1-2:3