Transcript: lnc-SCAMP4-4:2

Basic information

LNCipedia transcript ID: lnc-SCAMP4-4:2 
LNCipedia gene ID: lnc-SCAMP4-4
Ensembl Gene ID: ENSG00000267125
Ensembl Transcript ID: ENST00000592884
Location (hg38): chr19:1852382-1853622
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 500 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000592884.2
Alternative gene names: ENSG00000267125.2; CTB-31O20.6; AC012615.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -82.9076 non-coding 
CPAT coding probability 41.80% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SCAMP4-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SCAMP4-4:2
4.1 lnc-SCAMP4-4:2
5.0 lnc-SCAMP4-4:2
5.1 lnc-RPL36-117:1
5.2 lnc-SCAMP4-4:2