Transcript: lnc-SCGB1D4-1:1

Basic information

LNCipedia transcript ID: lnc-SCGB1D4-1:1 
LNCipedia gene ID: lnc-SCGB1D4-1
Ensembl Gene ID: ENSG00000255118
Ensembl Transcript ID: ENST00000400902
Location (hg38): chr11:62336911-62338090
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 485 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000400902.4; RP11-703H8.7-001; OTTHUMT00000394864.1; NONHSAT021739
Alternative gene names: ENSG00000255118.1; RP11-703H8.7; OTTHUMG00000167512.1; AP003306.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.216 non-coding 
CPAT coding probability 16.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCGB1D4-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCGB1D4-1:1
4.0 lnc-SCGB1D4-1:1
4.1 lnc-SCGB1D4-1:1
5.0 lnc-SCGB1D4-1:1
5.1 lnc-LTBP3-137:1
5.2 lnc-SCGB1D4-1:1