Transcript: lnc-SCGB1D4-2:1

Basic information

LNCipedia transcript ID: lnc-SCGB1D4-2:1 
LNCipedia gene ID: lnc-SCGB1D4-2
Ensembl Gene ID: ENSG00000254404
Ensembl Transcript ID: ENST00000529875
Location (hg38): chr11:62213427-62260549
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 353 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529875.1; RP11-703H8.9-001; OTTHUMT00000394858.1; NONHSAT021738
Alternative gene names: ENSG00000254404.1; RP11-703H8.9; OTTHUMG00000167507.1; AP003306.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.9699 non-coding 
CPAT coding probability 1.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCGB1D4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCGB1D4-2:1
4.0 lnc-SCGB1D4-2:1
4.1 lnc-SCGB1D4-2:1
5.0 lnc-SCGB1D4-2:1
5.1 lnc-LTBP3-140:1
5.2 lnc-SCGB1D4-2:1