Transcript: lnc-SCGB2B2-12:2

Basic information

LNCipedia transcript ID: lnc-SCGB2B2-12:2 
LNCipedia gene ID: lnc-SCGB2B2-12
Location (hg38): chr19:34390479-34393295
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1214 bp
Exons: 8
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000040757.1|HBMT00000734691.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 52.99 non-coding 
CPAT coding probability 14.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SCGB2B2-12:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SCGB2B2-12:2
5.0 lnc-SCGB2B2-12:2
5.1 lnc-SCGB2B2-12:2
5.2 lnc-SCGB2B2-12:2