Transcript: lnc-SCIMP-1:1

Basic information

LNCipedia transcript ID: lnc-SCIMP-1:1 
LNCipedia gene ID: lnc-SCIMP-1
Location (hg38): chr17:5239133-5242626
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3330 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025536; NONHSAT145195
Alternative gene names: XLOC_012366; linc-C17orf87


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 33.0818 non-coding 
CPAT coding probability 6.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCIMP-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCIMP-1:1
3.1 lnc-SCIMP-1:1
4.0 lnc-SCIMP-1:1
4.1 lnc-SCIMP-1:1
5.0 lnc-SCIMP-1:1
5.1 lnc-PHF23-38:1
5.2 lnc-SCIMP-1:1