Transcript: lnc-SCIMP-1:5

Basic information

LNCipedia transcript ID: lnc-SCIMP-1:5 
LNCipedia gene ID: lnc-SCIMP-1
Ensembl Gene ID: ENSG00000263164
Ensembl Transcript ID: ENST00000575056
Location (hg38): chr17:5240508-5241543
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 498 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000575056.1; RP11-333E1.2-001; OTTHUMT00000439347.1; NONHSAT145205
Alternative gene names: ENSG00000263164.1; RP11-333E1.2; OTTHUMG00000177869.1; AC087500.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.8783 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCIMP-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCIMP-1:5
4.0 lnc-SCIMP-1:5
4.1 lnc-SCIMP-1:5
5.0 lnc-SCIMP-1:5
5.1 lnc-PHF23-38:5
5.2 lnc-SCIMP-1:5