Transcript: lnc-SCLT1-2:1

Basic information

LNCipedia transcript ID: lnc-SCLT1-2:1 
LNCipedia gene ID: lnc-SCLT1-2
Ensembl Gene ID: ENSG00000248802
Ensembl Transcript ID: ENST00000509360
Location (hg38): chr4:128599439-128601407
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 203 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007826; ENST00000509360; ENST00000509360.1; RP11-184M15.2-001; OTTHUMT00000364057.1; NONHSAT098280
Alternative gene names: XLOC_004073; linc-PGRMC2-1; ENSG00000248802; RP11-184M15.2; ENSG00000248802.1; OTTHUMG00000161177.1; AC078850.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.1512 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCLT1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCLT1-2:1
3.1 lnc-SCLT1-2:1
4.0 lnc-SCLT1-2:1
4.1 lnc-SCLT1-2:1
5.0 lnc-SCLT1-2:1
5.1 lnc-TRPC3-36:2
5.2 lnc-SCLT1-2:1