Transcript: lnc-SCN2A-12:5

Basic information

LNCipedia transcript ID: lnc-SCN2A-12:5 
LNCipedia gene ID: lnc-SCN2A-12
Location (hg38): chr2:164840735-164922322
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1152 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233255.1|FTMT20700088563.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -123.3572 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCN2A-12:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SCN2A-6:27
5.0 lnc-SCN2A-6:27
5.1 lnc-TBR1-25:15
5.2 lnc-SCN2A-12:5