Transcript: lnc-SCN2A-12:7

Basic information

LNCipedia transcript ID: lnc-SCN2A-12:7 
LNCipedia gene ID: lnc-SCN2A-12
RefSeq ID: NR_110574
Location (hg38): chr2:164840749-164849396
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 629 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110574; NR_110574.1
Alternative gene names: LOC101929633


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -123.3572 non-coding 
CPAT coding probability 1.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCN2A-12:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCN2A-2:2
4.0 lnc-SCN2A-2:2
4.1 lnc-SCN2A-6:31
5.0 lnc-SCN2A-6:31
5.1 lnc-TBR1-25:20
5.2 lnc-SCN2A-12:7