Transcript: lnc-SCN2A-8:1

Basic information

LNCipedia transcript ID: lnc-SCN2A-8:1 
LNCipedia gene ID: lnc-SCN2A-8
Location (hg38): chr2:164663853-164671332
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 634 bp
Exons: 5
Sources: Nielsen et al.,2014
Alternative transcript names: l_1979_chr2:165520362-165527842_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.6786 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCN2A-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCN2A-8:1
4.0 lnc-SCN2A-8:1
4.1 lnc-SCN2A-8:1
5.0 lnc-SCN2A-8:1
5.1 lnc-TBR1-22:1
5.2 lnc-SCN2A-8:1