Transcript: lnc-SCN4B-51:3

Basic information

LNCipedia transcript ID: lnc-SCN4B-51:3 
LNCipedia gene ID: lnc-SCN4B-51
RefSeq ID: NR_038318
Location (hg38): chr11:118015772-118086793
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 382 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT024431; NR_038318; ENST00000606951.1; ENST00000606951.5; NR_038318.1
Alternative gene names: ENSG00000255274.4; TMPRSS4-AS1; ENSG00000255274.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.5811 non-coding 
CPAT coding probability 48.50% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SCN4B-51:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCN4B-1:4
4.0 TMPRSS4-AS1:3
4.1 TMPRSS4-AS1:3
5.0 TMPRSS4-AS1:3
5.1 lnc-SCN4B-7:3
5.2 lnc-SCN4B-51:3