Transcript: lnc-SCN8A-2:6

Basic information

LNCipedia transcript ID: lnc-SCN8A-2:6 
LNCipedia gene ID: lnc-SCN8A-2
Ensembl Gene ID: ENSG00000261586
Ensembl Transcript ID: ENST00000562343
Location (hg38): chr12:51817899-51820150
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2094 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT140071; ENST00000562343.2
Alternative gene names: ENSG00000261586.2; RP11-923I11.6; AC068987.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.83 non-coding 
CPAT coding probability 12.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCN8A-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCN8A-2:6
4.0 lnc-SCN8A-2:6
4.1 lnc-SCN8A-2:6
5.0 lnc-SCN8A-2:6
5.1 lnc-SCN8A-2:6
5.2 lnc-SCN8A-2:6