Transcript: lnc-SCN9A-72:1

Basic information

LNCipedia transcript ID: lnc-SCN9A-72:1 
LNCipedia gene ID: lnc-SCN9A-72
Location (hg38): chr2:166073302-166128013
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 704 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000507401.1; AC010127.4-001; OTTHUMT00000333744.1
Alternative gene names: ENSG00000249194.1; AC010127.4; OTTHUMG00000154077.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.1868 non-coding 
CPAT coding probability 67.91% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SCN9A-72:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCN1A-1:1
4.0 lnc-SCN1A-1:1
4.1 lnc-SCN1A-1:1
5.0 lnc-SCN1A-1:1
5.1 lnc-SCN9A-5:1
5.2 lnc-SCN9A-72:1