Transcript: lnc-SCO1-1:1

Basic information

LNCipedia transcript ID: lnc-SCO1-1:1 
LNCipedia gene ID: lnc-SCO1-1
Location (hg38): chr17:10672474-10676006
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3533 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000608312.1
Alternative gene names: ENSG00000273290.1; CTC-297N7.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.6954 non-coding 
CPAT coding probability 2.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCO1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCO1-1:1
4.0 lnc-SCO1-1:1
4.1 lnc-SCO1-1:1
5.0 lnc-SCO1-1:1
5.1 lnc-GAS7-6:2
5.2 lnc-SCO1-1:1