Transcript: lnc-SCP2D1-3:1

Basic information

LNCipedia transcript ID: lnc-SCP2D1-3:1 
LNCipedia gene ID: lnc-SCP2D1-3
Location (hg38): chr20:18997186-18998640
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 462 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_2082_chr20:18977829-18979284_heart
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.0037 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCP2D1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf79-3:1
4.0 lnc-C20orf79-3:1
4.1 lnc-C20orf79-3:1
5.0 lnc-C20orf79-3:1
5.1 lnc-CFAP61-12:1
5.2 lnc-SCP2D1-3:1