Transcript: lnc-SCRIB-1:1

Basic information

LNCipedia transcript ID: lnc-SCRIB-1:1 
LNCipedia gene ID: lnc-SCRIB-1
Ensembl Gene ID: ENSG00000254973
Ensembl Transcript ID: ENST00000529743
Location (hg38): chr8:143758153-143771822
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1809 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529743; ENST00000529743.1; RP11-429J17.7-001; OTTHUMT00000382210.1; NONHSAT129655
Alternative gene names: ENSG00000254973; RP11-429J17.7; ENSG00000254973.1; OTTHUMG00000165152.1; AC105219.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.7728 non-coding 
CPAT coding probability 31.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCRIB-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCRIB-1:1
3.1 lnc-SCRIB-1:1
4.0 lnc-SCRIB-1:1
4.1 lnc-SCRIB-1:1
5.0 lnc-SCRIB-1:1
5.1 lnc-TMEM249-43:3
5.2 lnc-SCRIB-1:1