Transcript: lnc-SCRN3-3:2

Basic information

LNCipedia transcript ID: lnc-SCRN3-3:2 
LNCipedia gene ID: lnc-SCRN3-3
Ensembl Gene ID: ENSG00000236449
Ensembl Transcript ID: ENST00000412835
Location (hg38): chr2:174547374-174665689
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1405 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412835; ENST00000412835.1; AC018890.6-001; OTTHUMT00000334129.1; NONHSAT075571
Alternative gene names: ENSG00000236449; AC018890.6; ENSG00000236449.1; OTTHUMG00000154592.2; AC010894.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.2068 non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCRN3-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCRN3-2:2
3.1 lnc-SCRN3-3:2
4.0 lnc-SCRN3-3:2
4.1 lnc-SCRN3-3:2
5.0 lnc-SCRN3-3:2
5.1 lnc-UBR3-62:2
5.2 lnc-SCRN3-3:2