Transcript: lnc-SDE2-1:14

Basic information

LNCipedia transcript ID: lnc-SDE2-1:14 
LNCipedia gene ID: lnc-SDE2-1
Ensembl Gene ID: ENSG00000272562
Ensembl Transcript ID: ENST00000609423
Location (hg38): chr1:226060712-226061876
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 490 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609423.1
Alternative gene names: ENSG00000272562.1; RP11-396C23.4; AL512343.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -224.3506 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SDE2-1:14 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf55-1:2
4.0 lnc-C1orf55-1:2
4.1 lnc-C1orf55-1:2
5.0 lnc-C1orf55-1:2
5.1 lnc-LEFTY2-8:14
5.2 lnc-SDE2-1:14