Transcript: lnc-SDE2-1:3

Basic information

LNCipedia transcript ID: lnc-SDE2-1:3 
LNCipedia gene ID: lnc-SDE2-1
Location (hg38): chr1:226046918-226062495
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 14193 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272562.1|ENCT00000038641.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 21.8771 non-coding 
CPAT coding probability 1.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SDE2-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C1orf55-1:6
5.0 lnc-C1orf55-1:6
5.1 lnc-LEFTY2-8:3
5.2 lnc-SDE2-1:3